It would be nice if we could "follow" or "add" bus stops on OneBusAway, and then we could get notifications about our buses. For example, a notification could pop up on your phone, saying something like "Your bus is on time today" or "Your bus is "x" minutes late/early today". It would be great if we could get notifications like that without having to check the bus app for that information ourselves.
The recent bus stops list gets crowded with random bus stops and can be very confusing. It would be nice to be able to delete individual recent stops or at least clear all.
Some mapping apps on iphone will continue to display even after iPhone locks. This is a nice feature because it preserves batteries and you don't have to enter your password to see the latest status. I'm not sure if it is relevant for other phones.
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Not everyone can run iOS later than 3.1.2, so the requirement of 3.1.3 is an artificial limiter. Please re-compile so that as many 3.x users can enjoy this great app!
Allow users to select a particular bus at a stop and see what route/streets it follows plotted on the map in iPhone app.